Name Full Name or Source Reference URL GTEx Genotype-Tissue Expression 9 http://gtexportal.org dbGaP Database of Genotypes and Phenotypes 10 http://www.ncbi.nlm.nih.gov/gap dbHiMo Database for Histone-modifying Enzymes 11 http://hme.riceblast.snu.ac.kr/ KEGG Kyoto Encyclopedia of Genes and Genomes 14-16 www.genome.jp/kegg DDBJ DNA Data Bank of Japan 17 www.ddbj.nig.ac.jp JSNP Japanese Single Nucleotide Polymorphisms 18 http://snp.ims.u-tokyo.ac.jp/ ERGO Integrated Genomics; Inc. 19;20 www.igenbio.com/ergo DGV Database of Genomic Variants 21-23 http://projects.tcag.ca/variation COSMIC Catalogue of Somatic Mutations in Cancer 24;25 http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/ GeMDBJ Genome Medicine Database of Japan 26 http://gemdbj.nibio.go.jp/ ICGC International Cancer Genome Consortium 27 http://dcc.icgc.org TCGA The Cancer Genome Atlas 29;30 http://cancergenome.nih.gov/dataportal EGA European Genome-phenome Archive 31 https://www.ebi.ac.uk/ega/ GEO Gene Expression Omnibus 32;33 http://www.ncbi.nlm.nih.gov/geo DAVID Database for Annotation; Visualization and Integrated Discovery 34 http://david.abcc.ncifcrf.gov cBioPortal cBioPortal for Cancer Genomics 35 http://cbioportal.org UniProtKB UniProt Knowledgebase 36;37 www.uniprot.org http://www.expasy.org/sprot/ http://www.ebi.ac.uk/swissprot/ CCLE Cancer Cell Line Encyclopedia 38 http://www.broadinstitute.org/ccle/home NextBio Illumina 39 http://www.nextbio.com/

Table 1: Databases for analyzing gene regulation.